HiBrowse: Multi-purpose statistical analysis of genome-wide chromatin 3D organization

dc.date.accessioned	2018-11-15T13:45:18Z
dc.date.available	2018-11-15T13:45:18Z
dc.date.created	2014-11-15T09:55:40Z
dc.date.issued	2014
dc.identifier.citation	Paulsen, Jonas Sandve, Geir Kjetil F. Gundersen, Sveinung Lien, Tonje Gulbrandsen Trengereid, Kai Hovig, Johannes Eivind . HiBrowse: Multi-purpose statistical analysis of genome-wide chromatin 3D organization. Bioinformatics. 2014, 30(11), 1620-1622
dc.identifier.uri	http://hdl.handle.net/10852/65546
dc.description.abstract	Recently developed methods that couple next-generation sequencing with chromosome conformation capture-based techniques, such as Hi-C and ChIA-PET, allow for characterization of genome-wide chromatin 3D structure. Understanding the organization of chromatin in three dimensions is a crucial next step in the unraveling of global gene regulation, and methods for analyzing such data are needed. We have developed HiBrowse, a user-friendly web-tool consisting of a range of hypothesis-based and descriptive statistics, using realistic assumptions in null-models.	en_US
dc.language	EN
dc.publisher	Oxford University Press
dc.rights	Attribution-NonCommercial 3.0 Unported
dc.rights.uri	https://creativecommons.org/licenses/by-nc/3.0/
dc.title	HiBrowse: Multi-purpose statistical analysis of genome-wide chromatin 3D organization	en_US
dc.type	Journal article	en_US
dc.creator.author	Paulsen, Jonas
dc.creator.author	Sandve, Geir Kjetil F.
dc.creator.author	Gundersen, Sveinung
dc.creator.author	Lien, Tonje Gulbrandsen
dc.creator.author	Trengereid, Kai
dc.creator.author	Hovig, Johannes Eivind
cristin.unitcode	185,15,5,35
cristin.unitname	Forskningsgruppen for biomedisinsk informatikk
cristin.ispublished	true
cristin.fulltext	original
cristin.qualitycode	2
dc.identifier.cristin	1173180
dc.identifier.bibliographiccitation	info:ofi/fmt:kev:mtx:ctx&ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Bioinformatics&rft.volume=30&rft.spage=1620&rft.date=2014
dc.identifier.jtitle	Bioinformatics
dc.identifier.volume	30
dc.identifier.issue	11
dc.identifier.startpage	1620
dc.identifier.endpage	1622
dc.identifier.doi	http://dx.doi.org/10.1093/bioinformatics/btu082
dc.identifier.urn	URN:NBN:no-68120
dc.type.document	Tidsskriftartikkel	en_US
dc.type.peerreviewed	Peer reviewed
dc.source.issn	1367-4803
dc.identifier.fulltext	Fulltext https://www.duo.uio.no/bitstream/handle/10852/65546/2/btu082.pdf
dc.type.version	PublishedVersion
dc.relation.project	NFR/174826