dc.date.accessioned | 2018-08-10T10:32:34Z | |
dc.date.available | 2018-08-10T10:32:34Z | |
dc.date.created | 2017-01-30T11:16:58Z | |
dc.date.issued | 2017 | |
dc.identifier.citation | Meisal, Roger Rounge, Trine Ballestad Christiansen, Irene Kraus Eieland, Alexander Kirkeby Worren, Merete Molton Molden, Tor Kommedal, Øyvind Hovig, Eivind Leegaard, Truls Michael Ambur, Ole Herman . HPV Genotyping of Modified General Primer-Amplicons Is More Analytically Sensitive and Specific by Sequencing than by Hybridization. PLoS ONE. 2017, 12(1) | |
dc.identifier.uri | http://hdl.handle.net/10852/62842 | |
dc.description.abstract | Sensitive and specific genotyping of human papillomaviruses (HPVs) is important for population-based surveillance of carcinogenic HPV types and for monitoring vaccine effectiveness. Here we compare HPV genotyping by Next Generation Sequencing (NGS) to an established DNA hybridization method. In DNA isolated from urine, the overall analytical sensitivity of NGS was found to be 22% higher than that of hybridization. NGS was also found to be the most specific method and expanded the detection repertoire beyond the 37 types of the DNA hybridization assay. Furthermore, NGS provided an increased resolution by identifying genetic variants of individual HPV types. The same Modified General Primers (MGP)-amplicon was used in both methods. The NGS method is described in detail to facilitate implementation in the clinical microbiology laboratory and includes suggestions for new standards for detection and calling of types and variants with improved resolution. | en_US |
dc.language | EN | |
dc.publisher | Public Library of Science (PLoS) | |
dc.title | HPV Genotyping of Modified General Primer-Amplicons Is More Analytically Sensitive and Specific by Sequencing than by Hybridization | en_US |
dc.type | Journal article | en_US |
dc.creator.author | Meisal, Roger | |
dc.creator.author | Rounge, Trine Ballestad | |
dc.creator.author | Christiansen, Irene Kraus | |
dc.creator.author | Eieland, Alexander Kirkeby | |
dc.creator.author | Worren, Merete Molton | |
dc.creator.author | Molden, Tor | |
dc.creator.author | Kommedal, Øyvind | |
dc.creator.author | Hovig, Eivind | |
dc.creator.author | Leegaard, Truls Michael | |
dc.creator.author | Ambur, Ole Herman | |
cristin.unitcode | 185,15,5,35 | |
cristin.unitname | Forskningsgruppen for biomedisinsk informatikk | |
cristin.ispublished | true | |
cristin.fulltext | original | |
cristin.fulltext | original | |
cristin.qualitycode | 1 | |
dc.identifier.cristin | 1441001 | |
dc.identifier.bibliographiccitation | info:ofi/fmt:kev:mtx:ctx&ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=PLoS ONE&rft.volume=12&rft.spage=&rft.date=2017 | |
dc.identifier.jtitle | PLoS ONE | |
dc.identifier.volume | 12 | |
dc.identifier.issue | 1 | |
dc.identifier.pagecount | 14 | |
dc.identifier.doi | http://dx.doi.org/10.1371/journal.pone.0169074 | |
dc.identifier.urn | URN:NBN:no-65422 | |
dc.type.document | Tidsskriftartikkel | en_US |
dc.type.peerreviewed | Peer reviewed | |
dc.source.issn | 1932-6203 | |
dc.identifier.fulltext | Fulltext https://www.duo.uio.no/bitstream/handle/10852/62842/1/Meisal_2017_Hpv.pdf | |
dc.type.version | PublishedVersion | |