Browsing Museene by Author "Dunthorn, Micah"

Now showing items 1-8 of 8

  • Above- and below-ground biodiversity responses to the prolonged flood pulse in central-western Amazonia, Brazil 
    Bredin, Yennie Katarina; Hess, Laura L.; Scabin, Andressa B.; Dunthorn, Micah; Haugaasen, Torbjørn; Peres, Carlos A.; Nilsson, Henrik R.; Antonelli, Alexandre; Ritter, Camila D. (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2021)
    Amazonia encompasses extensive forests in areas that are periodically inundated by overflowing rivers. The inundation depth and duration vary according to the slope of the terrain and distance to major water bodies. This ...
  • Future prospects for investigating ciliate biodiversity 
    Rajter, Ľubomír; Lu, Borong; Rassoshanska, Erika; Dunthorn, Micah (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2022)
    Ciliates have a long history of being central in evolutionary and ecological studies on eukaryotic microorganisms. Although thousands of species have been discovered, their total diversity still remains unknown. Here, we ...
  • Metabarcoding advances for ecology and biogeography of neotropical protists: What do we know, where do we go? 
    Ritter, Camila Duarte; Machado, Arielli Fabrício; Ribeiro, Karine Felix; Dunthorn, Micah (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2021)
    Abstract: The Neotropics is one of the most diverse regions of the globe in terms of plants and animal species. Regarding the microbial world, however, little is known about the diversity and biogeography patterns of ...
  • Metagenomic analysis using phylogenetic placement--a review of the first decade 
    Czech, Lucas; Stamatakis, Alexandros; Dunthorn, Micah; Barbera, Pierre (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2022)
    Phylogenetic placement refers to a family of tools and methods to analyze, visualize, and interpret the tsunami of metagenomic sequencing data generated by high-throughput sequencing. Compared to alternative (e. g., ...
  • Molecular insight reveals broad-scale spatial patterns in floodplain ciliate communities, while morphology reflects local environmental controls 
    Lansac-Tôha, F.M.; Buosi, P.R.B.; Baumgartner, M.T.; Progênio, M.; Meira, B.R.; Cabral, A.F.; Segovia, B.T.; Dunthorn, Micah; Lentendu, G.; Lansac-Tôha, F.A.; Velho, L.F.M. (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2022)
    One of the major goals in microbial ecology is to understand whether the empirical biogeographic patterns of macroorganisms also apply to microorganisms. Here, we used morphological data from live organisms, along with ...
  • Phylogenetic relatedness drives protist assembly in marine and terrestrial environments 
    Lentendu, Guillaume; Dunthorn, Micah; Dunthorn, Micah (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2021)
    Aim Assembly of protist communities is known to be driven mainly by environmental filtering, but the imprint of phylogenetic relatedness is unknown. In this study, we aimed to test the degree to which co-occurrences and ...
  • Report of the 2022 Protistology Nordics meeting 
    Dunthorn, Micah (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2022)
  • Swarm v3: towards tera-scale amplicon clustering 
    Mahé, Frédéric; Czech, Lucas; Stamatakis, Alexandros; Quince, Christopher; de Vargas, Colomban; Dunthorn, Micah; Rognes, Torbjørn (Journal article / Tidsskriftartikkel / PublishedVersion; Peer reviewed, 2021)
    Motivation Previously we presented swarm, an open-source amplicon clustering programme that produces fine-scale molecular operational taxonomic units (OTUs) that are free of arbitrary global clustering thresholds. Here, ...