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dc.date.accessioned2024-02-15T17:31:20Z
dc.date.available2024-02-15T17:31:20Z
dc.date.created2023-10-02T14:03:55Z
dc.date.issued2023
dc.identifier.citationSchnepf, Andrea Black, Christopher K Couvreur, Valentin Delory, Benjamin M Doussan, Claude Heymans, Adrien Javaux, Mathieu Khare, Deepanshu Koch, Axelle Koch, Timo Kuppe, Christian W Landl, Magdalena Leitner, Daniel Lobet, Guillaume Meunier, Félicien Postma, Johannes Auke Schäfer, Ernst D Selzner, Tobias Vanderborght, Jan Vereecken, Harry . Collaborative benchmarking of functional-structural root architecture models: Quantitative comparison of simulated root water uptake. in silico Plants (isP). 2023
dc.identifier.urihttp://hdl.handle.net/10852/108076
dc.description.abstractAbstract Functional-structural root architecture models have evolved as tools for the design of improved agricultural management practices and for the selection of optimal root traits. In order to test their accuracy and reliability, we present the first benchmarking of root water uptake from soil using five well-established functional-structural root architecture models: DuMux, CPlantBox, R-SWMS, OpenSimRoot and SRI. The benchmark scenarios include basic tests for water flow in soil and roots as well as advanced tests for the coupled soil-root system. The reference solutions and the solutions of the different simulators are available through Jupyter Notebooks on a GitHub repository. All of the simulators were able to pass the basic tests and continued to perform well in the benchmarks for the coupled soil-plant system. For the advanced tests, we created an overview of the different ways of coupling the soil and the root domains as well as the different methods used to account for rhizosphere resistance to water flow. Although the methods used for coupling and modelling rhizosphere resistance were quite different, all simulators were in reasonably good agreement with the reference solution. During this benchmarking effort, individual simulators were able to learn about their strengths and challenges, while some were even able to improve their code. Some now include the benchmarks as standard tests within their codes. Additional model results may be added to the GitHub repository at any point in the future and will be automatically included in the comparison.
dc.languageEN
dc.rightsAttribution 4.0 International
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.titleCollaborative benchmarking of functional-structural root architecture models: Quantitative comparison of simulated root water uptake
dc.title.alternativeENEngelskEnglishCollaborative benchmarking of functional-structural root architecture models: Quantitative comparison of simulated root water uptake
dc.typeJournal article
dc.creator.authorSchnepf, Andrea
dc.creator.authorBlack, Christopher K
dc.creator.authorCouvreur, Valentin
dc.creator.authorDelory, Benjamin M
dc.creator.authorDoussan, Claude
dc.creator.authorHeymans, Adrien
dc.creator.authorJavaux, Mathieu
dc.creator.authorKhare, Deepanshu
dc.creator.authorKoch, Axelle
dc.creator.authorKoch, Timo
dc.creator.authorKuppe, Christian W
dc.creator.authorLandl, Magdalena
dc.creator.authorLeitner, Daniel
dc.creator.authorLobet, Guillaume
dc.creator.authorMeunier, Félicien
dc.creator.authorPostma, Johannes Auke
dc.creator.authorSchäfer, Ernst D
dc.creator.authorSelzner, Tobias
dc.creator.authorVanderborght, Jan
dc.creator.authorVereecken, Harry
cristin.unitcode185,15,13,15
cristin.unitnameMekanikk
cristin.ispublishedtrue
cristin.fulltextoriginal
cristin.qualitycode1
dc.identifier.cristin2180973
dc.identifier.bibliographiccitationinfo:ofi/fmt:kev:mtx:ctx&ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=in silico Plants (isP)&rft.volume=&rft.spage=&rft.date=2023
dc.identifier.jtitlein silico Plants (isP)
dc.identifier.volume5
dc.identifier.issue1
dc.identifier.doihttps://doi.org/10.1093/insilicoplants/diad005
dc.type.documentTidsskriftartikkel
dc.type.peerreviewedPeer reviewed
dc.source.issn2517-5025
dc.type.versionPublishedVersion
cristin.articleiddiad005


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Attribution 4.0 International
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